Lee Bender,
<< hyperchem..>>
Hyperchem is designed for modelling behaviour through algorithms. It
is possible to take this data and then create a 3ds mesh and
keyframmer data in order to add to the presentation and flic or tape
laying by utilyzing 3DS. This is possible because of a shareware
program in the libs section 9 called cine.exe. Download it. There is
a sample output file from HyperChem that you would translate into
3ds. Try them out. I liked the resulting flic and the *feeling* of
the relationship between moving atoms.